JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/MA1241.1/

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "tfbs_shape_id": "1",
    "source": "27203113",
    "family": [],
    "type": "DAP-seq",
    "tffm": {
        "log_p_detailed": -11106.4,
        "tffm_url": "https://jaspar2020.genereg.net/api/v1/tffm/TFFM0268.1/",
        "experiment_name": "GSE60143",
        "log_p_1st_order": -11146.1,
        "tffm_id": "TFFM0268.1",
        "version": 1,
        "base_id": "TFFM0268"
    },
    "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/MA1241/versions",
    "version": 1,
    "pazar_tf_id": [],
    "base_id": "MA1241",
    "tax_group": "plants",
    "tfe_ids": [],
    "uniprot_ids": [
        "Q9M080"
    ],
    "name": "AT4G32800",
    "collection": "CORE",
    "pfm": {
        "C": [
            184.0,
            81.0,
            352.0,
            537.0,
            0.0,
            591.0,
            591.0,
            0.0,
            0.0,
            591.0,
            0.0,
            202.0,
            97.0,
            86.0,
            138.0,
            191.0
        ],
        "A": [
            174.0,
            169.0,
            29.0,
            18.0,
            540.0,
            0.0,
            0.0,
            0.0,
            588.0,
            0.0,
            567.0,
            215.0,
            222.0,
            197.0,
            161.0,
            137.0
        ],
        "T": [
            151.0,
            188.0,
            127.0,
            22.0,
            0.0,
            0.0,
            0.0,
            0.0,
            3.0,
            0.0,
            1.0,
            93.0,
            234.0,
            211.0,
            196.0,
            190.0
        ],
        "G": [
            82.0,
            153.0,
            83.0,
            14.0,
            51.0,
            0.0,
            0.0,
            591.0,
            0.0,
            0.0,
            23.0,
            81.0,
            38.0,
            97.0,
            96.0,
            73.0
        ]
    },
    "pazar_tf_ids": [],
    "medline": [
        "15319480"
    ],
    "species": [
        {
            "name": "Arabidopsis thaliana",
            "tax_id": 3702
        }
    ],
    "pubmed_ids": [
        "15319480"
    ],
    "tfe_id": [],
    "sites_url": null,
    "sequence_logo": "https://jaspar2020.genereg.net/static/logos/svg/MA1241.1.svg",
    "class": [
        "AP2/ERF domain"
    ],
    "matrix_id": "MA1241.1"
}

Matrix Details