JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/MA1397.1/

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "tfe_ids": [],
    "pazar_tf_id": [],
    "medline": [
        "25215497"
    ],
    "version": 1,
    "tax_group": "plants",
    "tfbs_shape_id": "1",
    "source": "27203113",
    "uniprot_ids": [],
    "pazar_tf_ids": [],
    "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/MA1397/versions",
    "matrix_id": "MA1397.1",
    "tffm": {
        "experiment_name": "GSE60143",
        "log_p_1st_order": -18195.4,
        "base_id": "TFFM0245",
        "version": 1,
        "log_p_detailed": -18417.4,
        "tffm_id": "TFFM0245.1",
        "tffm_url": "https://jaspar2020.genereg.net/api/v1/tffm/TFFM0245.1/"
    },
    "name": "At1g74840",
    "tfe_id": [],
    "sites_url": null,
    "family": [
        "Myb-related"
    ],
    "base_id": "MA1397",
    "pfm": {
        "T": [
            278.0,
            199.0,
            460.0,
            0.0,
            0.0,
            0.0,
            600.0,
            11.0,
            13.0,
            137.0,
            92.0
        ],
        "C": [
            8.0,
            32.0,
            92.0,
            0.0,
            0.0,
            0.0,
            0.0,
            6.0,
            0.0,
            60.0,
            72.0
        ],
        "A": [
            300.0,
            255.0,
            46.0,
            39.0,
            0.0,
            600.0,
            0.0,
            578.0,
            549.0,
            168.0,
            208.0
        ],
        "G": [
            14.0,
            114.0,
            2.0,
            561.0,
            600.0,
            0.0,
            0.0,
            5.0,
            38.0,
            235.0,
            228.0
        ]
    },
    "collection": "CORE",
    "class": [
        "Helix-Turn-Helix"
    ],
    "type": "DAP-seq",
    "sequence_logo": "https://jaspar2020.genereg.net/static/logos/svg/MA1397.1.svg",
    "species": [
        {
            "name": "Arabidopsis thaliana",
            "tax_id": 3702
        }
    ],
    "pubmed_ids": [
        "25215497"
    ]
}

Matrix Details