Matrix Details
This API provides an easy-to-use REST web interface to query/retrieve matrix
profile data from the latest version of the JASPAR database. The API comes
with a human browsable interface and also a programmatic interface which
return the results in eight different formats, including
json
,
jsonp
, jaspar
, meme
,
transfac
, pfm
, yaml
and
bed
.
GET /api/v1/matrix/MA1397.1/
{ "collection": "CORE", "class": [ "Helix-Turn-Helix" ], "sites_url": null, "type": "DAP-seq", "tfbs_shape_id": "1", "uniprot_ids": [], "pubmed_ids": [ "25215497" ], "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/MA1397/versions", "source": "27203113", "matrix_id": "MA1397.1", "pazar_tf_id": [], "medline": [ "25215497" ], "name": "At1g74840", "version": 1, "tfe_id": [], "family": [ "Myb-related" ], "pazar_tf_ids": [], "base_id": "MA1397", "tffm": { "log_p_1st_order": -18195.4, "tffm_url": "https://jaspar2020.genereg.net/api/v1/tffm/TFFM0245.1/", "log_p_detailed": -18417.4, "base_id": "TFFM0245", "experiment_name": "GSE60143", "version": 1, "tffm_id": "TFFM0245.1" }, "tfe_ids": [], "species": [ { "name": "Arabidopsis thaliana", "tax_id": 3702 } ], "sequence_logo": "https://jaspar2020.genereg.net/static/logos/svg/MA1397.1.svg", "pfm": { "T": [ 278.0, 199.0, 460.0, 0.0, 0.0, 0.0, 600.0, 11.0, 13.0, 137.0, 92.0 ], "A": [ 300.0, 255.0, 46.0, 39.0, 0.0, 600.0, 0.0, 578.0, 549.0, 168.0, 208.0 ], "G": [ 14.0, 114.0, 2.0, 561.0, 600.0, 0.0, 0.0, 5.0, 38.0, 235.0, 228.0 ], "C": [ 8.0, 32.0, 92.0, 0.0, 0.0, 0.0, 0.0, 6.0, 0.0, 60.0, 72.0 ] }, "tax_group": "plants" }