Matrix Details
This API provides an easy-to-use REST web interface to query/retrieve matrix
profile data from the latest version of the JASPAR database. The API comes
with a human browsable interface and also a programmatic interface which
return the results in eight different formats, including
json
,
jsonp
, jaspar
, meme
,
transfac
, pfm
, yaml
and
bed
.
GET /api/v1/matrix/MA0001.1.api?format=transfac
https://jaspar2020.genereg.net/static/logos/svg/MA0001.1.svg", "tfe_id": [], "type": "SELEX", "pubmed_ids": [ "7632923" ], "version": 1, "species": [ { "name": "Arabidopsis thaliana", "tax_id": 3702 } ], "family": [ "MADS" ], "pazar_tf_id": [], "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/MA0001/versions", "pfm": { "C": [ 94.0, 75.0, 4.0, 3.0, 1.0, 2.0, 5.0, 2.0, 3.0, 3.0 ], "G": [ 1.0, 0.0, 3.0, 4.0, 1.0, 0.0, 5.0, 3.0, 28.0, 88.0 ], "A": [ 0.0, 3.0, 79.0, 40.0, 66.0, 48.0, 65.0, 11.0, 65.0, 0.0 ], "T": [ 2.0, 19.0, 11.0, 50.0, 29.0, 47.0, 22.0, 81.0, 1.0, 6.0 ] }, "tffm": null, "name": "AGL3", "pazar_tf_ids": [], "sites_url": null, "tfe_ids": [], "medline": [ "7632923" ] }{ "matrix_id": "MA0001.1", "collection": "CORE", "tfbs_shape_id": "10", "class": [ "MADS box factors" ], "tax_group": "plants", "uniprot_ids": [ "P29383" ], "base_id": "MA0001", "sequence_logo": "