JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/MA0110.2/?format=api

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "tfe_ids": [],
    "pazar_tf_id": [],
    "medline": [
        "11247607"
    ],
    "version": 2,
    "family": [],
    "tfbs_shape_id": "1",
    "uniprot_ids": [
        "P46667"
    ],
    "pazar_tf_ids": [],
    "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/MA0110/versions",
    "matrix_id": "MA0110.2",
    "tffm": {
        "experiment_name": "GSE60143",
        "log_p_1st_order": -32701.0,
        "base_id": "TFFM0294",
        "version": 1,
        "log_p_detailed": -32557.3,
        "tffm_id": "TFFM0294.1",
        "tffm_url": "https://jaspar2020.genereg.net/api/v1/tffm/TFFM0294.1/"
    },
    "name": "ATHB-5",
    "tfe_id": [],
    "sites_url": null,
    "tax_group": "plants",
    "base_id": "MA0110",
    "pfm": {
        "T": [
            9.0,
            4.0,
            14.0,
            7.0,
            3.0,
            1.0,
            0.0,
            39.0,
            22.0,
            0.0,
            39.0,
            39.0,
            1.0
        ],
        "C": [
            9.0,
            9.0,
            12.0,
            17.0,
            32.0,
            6.0,
            0.0,
            0.0,
            8.0,
            0.0,
            0.0,
            0.0,
            0.0
        ],
        "A": [
            0.0,
            4.0,
            2.0,
            2.0,
            0.0,
            32.0,
            39.0,
            0.0,
            2.0,
            39.0,
            0.0,
            0.0,
            0.0
        ],
        "G": [
            12.0,
            17.0,
            8.0,
            10.0,
            4.0,
            0.0,
            0.0,
            0.0,
            7.0,
            0.0,
            0.0,
            0.0,
            7.0
        ]
    },
    "collection": "CORE",
    "class": [
        "Homeo domain factors"
    ],
    "type": "SELEX",
    "sequence_logo": "https://jaspar2020.genereg.net/static/logos/svg/MA0110.2.svg",
    "species": [
        {
            "name": "Arabidopsis thaliana",
            "tax_id": 3702
        }
    ],
    "pubmed_ids": [
        "11247607"
    ]
}

Matrix Details