JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/MA0197.2/?format=api

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "pfm": {
        "A": [
            2.0,
            29.0,
            0.0,
            0.0,
            0.0,
            24.0,
            28.0,
            28.0,
            4.0,
            6.0,
            19.0,
            4.0
        ],
        "G": [
            1.0,
            0.0,
            0.0,
            25.0,
            1.0,
            0.0,
            1.0,
            0.0,
            0.0,
            8.0,
            1.0,
            15.0
        ],
        "T": [
            25.0,
            0.0,
            29.0,
            4.0,
            9.0,
            5.0,
            0.0,
            1.0,
            24.0,
            10.0,
            4.0,
            7.0
        ],
        "C": [
            1.0,
            0.0,
            0.0,
            0.0,
            19.0,
            0.0,
            0.0,
            0.0,
            1.0,
            5.0,
            5.0,
            3.0
        ]
    },
    "collection": "CORE",
    "version": 2,
    "matrix_id": "MA0197.2",
    "tax_group": "insects",
    "tfbs_shape_id": "250",
    "pubmed_ids": [
        "18332042"
    ],
    "base_id": "MA0197",
    "tffm": null,
    "sites_url": null,
    "tfe_id": [],
    "tfe_ids": [],
    "name": "nub",
    "species": [
        {
            "name": "Drosophila melanogaster",
            "tax_id": 7227
        }
    ],
    "uniprot_ids": [
        "P31368"
    ],
    "type": "bacterial 1-hybrid",
    "pazar_tf_id": [],
    "class": [
        "Homeo domain factors"
    ],
    "medline": [
        "18332042"
    ],
    "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/MA0197/versions",
    "sequence_logo": "https://jaspar2020.genereg.net/static/logos/svg/MA0197.2.svg",
    "family": [
        "POU domain factors"
    ],
    "pazar_tf_ids": []
}

Matrix Details