Matrix Details
This API provides an easy-to-use REST web interface to query/retrieve matrix
profile data from the latest version of the JASPAR database. The API comes
with a human browsable interface and also a programmatic interface which
return the results in eight different formats, including
json
,
jsonp
, jaspar
, meme
,
transfac
, pfm
, yaml
and
bed
.
GET /api/v1/matrix/MA1693.1/
{ "pfm": { "G": [ 3827.0, 3747.0, 544.0, 585.0, 13571.0, 622.0, 233.0, 181.0, 10249.0, 825.0, 2708.0, 3589.0, 4418.0 ], "T": [ 3172.0, 3477.0, 293.0, 392.0, 142.0, 131.0, 115.0, 204.0, 1936.0, 587.0, 2063.0, 2923.0, 3087.0 ], "C": [ 2573.0, 3118.0, 13025.0, 1396.0, 174.0, 391.0, 13756.0, 172.0, 607.0, 11608.0, 3751.0, 3332.0, 3521.0 ], "A": [ 4678.0, 3908.0, 388.0, 11877.0, 363.0, 13106.0, 146.0, 13693.0, 1458.0, 1230.0, 5728.0, 4406.0, 3224.0 ] }, "uniprot_ids": [ "A0A060D7X7" ], "base_id": "MA1693", "matrix_id": "MA1693.1", "species": [ { "tax_id": 4577, "name": "Zea mays" } ], "source": "30375394", "name": "ARF34", "tffm": null, "collection": "CORE", "medline": [ "24485461" ], "pubmed_ids": [ "24485461" ], "tax_group": "plants", "tfe_ids": [], "pazar_tf_id": [], "tfe_id": [], "type": "DAP-seq", "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/MA1693/versions", "sequence_logo": "https://jaspar2020.genereg.net/static/logos/svg/MA1693.1.svg", "family": [], "comment": "The motif matches the TGTC core motif associated to ARF TFs.", "class": [ "B3 domain" ], "pazar_tf_ids": [], "centrality_logp": "-7013.58", "sites_url": null, "version": 1 }