JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/MA1693.1/?format=api

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "pazar_tf_ids": [],
    "tfe_id": [],
    "tax_group": "plants",
    "collection": "CORE",
    "base_id": "MA1693",
    "tfe_ids": [],
    "pubmed_ids": [
        "24485461"
    ],
    "sites_url": null,
    "class": [
        "B3 domain"
    ],
    "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/MA1693/versions",
    "pazar_tf_id": [],
    "pfm": {
        "T": [
            3172.0,
            3477.0,
            293.0,
            392.0,
            142.0,
            131.0,
            115.0,
            204.0,
            1936.0,
            587.0,
            2063.0,
            2923.0,
            3087.0
        ],
        "A": [
            4678.0,
            3908.0,
            388.0,
            11877.0,
            363.0,
            13106.0,
            146.0,
            13693.0,
            1458.0,
            1230.0,
            5728.0,
            4406.0,
            3224.0
        ],
        "G": [
            3827.0,
            3747.0,
            544.0,
            585.0,
            13571.0,
            622.0,
            233.0,
            181.0,
            10249.0,
            825.0,
            2708.0,
            3589.0,
            4418.0
        ],
        "C": [
            2573.0,
            3118.0,
            13025.0,
            1396.0,
            174.0,
            391.0,
            13756.0,
            172.0,
            607.0,
            11608.0,
            3751.0,
            3332.0,
            3521.0
        ]
    },
    "sequence_logo": "https://jaspar2020.genereg.net/static/logos/svg/MA1693.1.svg",
    "matrix_id": "MA1693.1",
    "medline": [
        "24485461"
    ],
    "tffm": null,
    "source": "30375394",
    "name": "ARF34",
    "type": "DAP-seq",
    "species": [
        {
            "tax_id": 4577,
            "name": "Zea mays"
        }
    ],
    "uniprot_ids": [
        "A0A060D7X7"
    ],
    "version": 1,
    "family": [],
    "comment": "The motif matches the TGTC core motif associated to ARF TFs.",
    "centrality_logp": "-7013.58"
}

Matrix Details