JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/PF0163.1/?format=api

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "pfm": {
        "G": [
            244.0,
            244.0,
            0.0,
            128.0,
            41.0,
            0.0,
            94.0,
            0.0,
            0.0,
            0.0,
            0.0
        ],
        "T": [
            0.0,
            0.0,
            0.0,
            0.0,
            48.0,
            244.0,
            150.0,
            148.0,
            0.0,
            0.0,
            0.0
        ],
        "A": [
            0.0,
            0.0,
            244.0,
            116.0,
            74.0,
            0.0,
            0.0,
            0.0,
            0.0,
            0.0,
            244.0
        ],
        "C": [
            0.0,
            0.0,
            0.0,
            0.0,
            81.0,
            0.0,
            0.0,
            96.0,
            244.0,
            244.0,
            0.0
        ]
    },
    "sites_url": null,
    "tfe_ids": [],
    "class": [
        "Unknown"
    ],
    "jaspar": "-",
    "tfe_id": [],
    "medline": [
        "15735639"
    ],
    "name": "GGARNTKYCCA",
    "version": 1,
    "pazar_tf_id": [],
    "transfac": "-",
    "uniprot_ids": [],
    "tffm": null,
    "type": "phylogenetic",
    "family": [],
    "pazar_tf_ids": [],
    "tax_group": "vertebrates",
    "base_id": "PF0163",
    "sequence_logo": "https://jaspar2020.genereg.net/static/logos/svg/PF0163.1.svg",
    "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/PF0163/versions",
    "species": [],
    "collection": "PHYLOFACTS",
    "tfbs_shape_id": "1",
    "matrix_id": "PF0163.1",
    "pubmed_ids": [
        "15735639"
    ],
    "mcs": "9.8"
}

Matrix Details