JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0001.1 LM1 YKGTTKCCATGGMAACMR Homo sapiens
CN0002.1 LM2 YNRCCACYAGATGGCAGYM Homo sapiens
CN0003.1 LM3 KGTTGCTWRGCAACM Homo sapiens
CN0004.1 LM4 RGCMTKCTGGGARTTGTAGTYY Homo sapiens
CN0005.1 LM5 TCCCATTARYRTTAATGGGA Homo sapiens
CN0006.1 LM6 CAAAGGCTCTTTTMAGAGCCACY Homo sapiens
CN0007.1 LM7 NNNCCAGCAGATGGCGCTRT Homo sapiens
CN0008.1 LM8 MATGAATWATTCATR Homo sapiens
CN0009.1 LM9 TTCAGCACCWYGGACAGMKMC Homo sapiens
CN0010.1 LM10 YKGTTTCCATGGAAACMR Homo sapiens
Showing 10 profiles of page 1 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.