JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0171.1 LM171 RTGTTAATGACTTC Homo sapiens
CN0172.1 LM172 AAATGAAATTCATTTG Homo sapiens
CN0173.1 LM173 ACTGATTTTCCTGACAA Homo sapiens
CN0174.1 LM174 AGCTGCCAAAAATC Homo sapiens
CN0175.1 LM175 CTGTTGACAGTAAA Homo sapiens
CN0176.1 LM176 GAGCCAGCTGGCTCM Homo sapiens
CN0177.1 LM177 CTTTGGCTTCAGACCAAAT Homo sapiens
CN0178.1 LM178 NNMWTTCATTTTCCAAAGCA Homo sapiens
CN0179.1 LM179 MTKNYWRATKMATYWRKMAR Homo sapiens
CN0180.1 LM180 KWTTTCATTTGAATGCT Homo sapiens
Showing 10 profiles of page 18 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.