JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0201.1 LM201 CTTTCAAAGGCTCATTA Homo sapiens
CN0202.1 LM202 CTTGCCAAATGTGAATT Homo sapiens
CN0203.1 LM203 TGACTGTGAAATTACAG Homo sapiens
CN0204.1 LM204 CTYAAATCCTTTYTGGAA Homo sapiens
CN0205.1 LM205 TTTCAAGTCAAAACA Homo sapiens
CN0206.1 LM206 GAAAACAGTTTGTTCTCT Homo sapiens
CN0207.1 LM207 WKRMYTTTKGCMAAAAKYMA Homo sapiens
CN0208.1 LM208 TGTGAAATGAGTTGG Homo sapiens
CN0209.1 LM209 CATTTCCTTTGTGGAATGAG Homo sapiens
CN0210.1 LM210 TCATYTTGCTTCTGAAAATG Homo sapiens
Showing 10 profiles of page 21 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.