JASPAR Collection CNE

  1. Home
  2. Collection CNE

Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0211.1 LM211 TGACCTAGAGGTGAAAGGC Homo sapiens
CN0212.1 LM212 ATGGCTTTCCAAATG Homo sapiens
CN0213.1 LM213 CTTTGAGTTCCTTGGAAGAA Homo sapiens
CN0214.1 LM214 TCTGGAAAAGCACATTTGAT Homo sapiens
CN0215.1 LM215 CATTTCTCAGAAATGACT Homo sapiens
CN0216.1 LM216 TTTCTCTTTGAAACCTGCAA Homo sapiens
CN0217.1 LM217 TTTCATTAGAAGATGAAGCA Homo sapiens
CN0218.1 LM218 GAAAATGGGCTGTTT Homo sapiens
CN0219.1 LM219 TGYKTTGYYWWRGCAAMRCA Homo sapiens
CN0220.1 LM220 ATGGCACTTTGGAAAATGGA Homo sapiens
Showing 10 profiles of page 22 from 24 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.