JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0221.1 LM221 TGGCTGKCTTCCCAG Homo sapiens
CN0222.1 LM222 TTGGAAAGACTTCAAAGA Homo sapiens
CN0223.1 LM223 AGMAGTAATTTACTAAATTG Homo sapiens
CN0224.1 LM224 AATCATGTTTGAAAG Homo sapiens
CN0225.1 LM225 CTGTGGAAAATCTGA Homo sapiens
CN0226.1 LM226 AAAGCTTTCTTAATG Homo sapiens
CN0227.1 LM227 GAATTTAGTGCTTGTGAAAA Homo sapiens
CN0228.1 LM228 TGTTTCATAAAGCTG Homo sapiens
CN0229.1 LM229 TTTCCATCATAAATC Homo sapiens
CN0230.1 LM230 TGGAATTCAAAACACATT Homo sapiens
Showing 10 profiles of page 23 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.