JASPAR Collection PBM

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Total 208 profiles

Display profiles
ID Name Species Class Family Sequence logo
PB0031.1 Hoxa3_1 Mus musculus Helix-Turn-Helix Homeo
PB0032.1 IRC900814_1 Mus musculus
PB0033.1 Irf3_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0034.1 Irf4_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0035.1 Irf5_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0036.1 Irf6_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0037.1 Isgf3g_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0038.1 Jundm2_1 Mus musculus Zipper-Type Leucine Zipper
PB0039.1 Klf7_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0040.1 Lef1_1 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
Showing 10 profiles of page 4 from 21 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.