JASPAR Collection CNE

  1. Home
  2. Collection cne

Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0101.1 LM101 ATTTGCATACATTTGCAT Homo sapiens
CN0102.1 LM102 TCAAAGYACTTTWCAARM Homo sapiens
CN0103.1 LM103 AAATGTCACCATCTGKW Homo sapiens
CN0104.1 LM104 TTGACCTTTAAAGCW Homo sapiens
CN0105.1 LM105 CTCCCATTGACTTCAATGG Homo sapiens
CN0106.1 LM106 TGCTGASTCAGCA Homo sapiens
CN0107.1 LM107 WKMAATTAGCCATCTG Homo sapiens
CN0108.1 LM108 YSAATTATCCAGATAATTGCY Homo sapiens
CN0109.1 LM109 WKCTGTSAWTCAMAR Homo sapiens
CN0110.1 LM110 ATTTCCTGGGGATTAATGACY Homo sapiens
CN0111.1 LM111 CTGACCTACTTT Homo sapiens
CN0112.1 LM112 CTCATTTGCATATTC Homo sapiens
CN0113.1 LM113 WYTGTTTTKCTTGGCA Homo sapiens
CN0114.1 LM114 TTTCCAATTAAGCT Homo sapiens
CN0115.1 LM115 CAAGATTAATKGCT Homo sapiens
CN0116.1 LM116 WWNAAGHTGAAAATTGCT Homo sapiens
CN0117.1 LM117 GATAATTGAGAGTTGAC Homo sapiens
CN0118.1 LM118 WSATTTWCWGKAAATSW Homo sapiens
CN0119.1 LM119 AAACCAATTAGCATC Homo sapiens
CN0120.1 LM120 CTTAATTACAGGCW Homo sapiens
CN0121.1 LM121 AGCTGCAAATTGCATTC Homo sapiens
CN0122.1 LM122 GMAGCTTTTAATGA Homo sapiens
CN0123.1 LM123 WGCTGTCAKTTKTMATK Homo sapiens
CN0124.1 LM124 YTGCCAAATGGAAAW Homo sapiens
CN0125.1 LM125 GCTAATTRCAAATSA Homo sapiens
CN0126.1 LM126 YTGCTCTAATTGCA Homo sapiens
CN0127.1 LM127 TTTTGACAGCTCAG Homo sapiens
CN0128.1 LM128 TGCCAAGTTTCAGCCTGGAG Homo sapiens
CN0129.1 LM129 WGMCAGATGRTMTKKNW Homo sapiens
CN0130.1 LM130 TCTGATTGGCTGKCR Homo sapiens
CN0131.1 LM131 TCCAAYTTGGATAATTGCAT Homo sapiens
CN0132.1 LM132 TRGTTCTCATTAAG Homo sapiens
CN0133.1 LM133 ACAGCCATAAATCAC Homo sapiens
CN0134.1 LM134 CTTAATTAGCTGWA Homo sapiens
CN0135.1 LM135 ACCCTRGTGGCCTGAAAGAG Homo sapiens
CN0136.1 LM136 NKYTGCCAAGAGCAACA Homo sapiens
CN0137.1 LM137 WNRRAGBAATTTGGCAGCW Homo sapiens
CN0138.1 LM138 ACAAAAGCCAGGAAAT Homo sapiens
CN0139.1 LM139 ACTGACCTACTTTCC Homo sapiens
CN0140.1 LM140 GTGACCTTTTGTTC Homo sapiens
CN0141.1 LM141 WGCCAAAMCAAACAGN Homo sapiens
CN0142.1 LM142 WNNWNACAGATCATTAACT Homo sapiens
CN0143.1 LM143 CATTAATCAGMATT Homo sapiens
CN0144.1 LM144 TGCTAATGAGGCCAAGGT Homo sapiens
CN0145.1 LM145 MTWCTCAGATGAAAGRTGCTW Homo sapiens
CN0146.1 LM146 CCTYTGCTGCCCTCTWVTG Homo sapiens
CN0147.1 LM147 MAGAAATCCATTAACW Homo sapiens
CN0148.1 LM148 CAGATTGACATTTC Homo sapiens
CN0149.1 LM149 TTGCTTTCAAATGCCAGGA Homo sapiens
CN0150.1 LM150 CATTAACCTTTAAC Homo sapiens
CN0151.1 LM151 MCCTGAAGCATGARATTTGATTR Homo sapiens
CN0152.1 LM152 WRRKAARYSAYTTMTCT Homo sapiens
CN0153.1 LM153 NCTGTGATTAAAGCA Homo sapiens
CN0154.1 LM154 CAKCTGGATGAAAAATG Homo sapiens
CN0155.1 LM155 CACTAGGGKACCATTTAGT Homo sapiens
CN0156.1 LM156 SCTTTGTAAACAAG Homo sapiens
CN0157.1 LM157 TGCCTAATTACACA Homo sapiens
CN0158.1 LM158 AWGGAAAWCWGWTTTCCWW Homo sapiens
CN0159.1 LM159 TTGCTTTGGAAGCAGCT Homo sapiens
CN0160.1 LM160 RCTTTCAGAAATSMMWWWW Homo sapiens
CN0161.1 LM161 CTAATGATTTCCTG Homo sapiens
CN0162.1 LM162 YCATTAGGAAGACAAATGR Homo sapiens
CN0163.1 LM163 TCATTTCCTCCTAATTGNY Homo sapiens
CN0164.1 LM164 TTGAAATGAAATGTGAC Homo sapiens
CN0165.1 LM165 GATTTCCTGTTGTG Homo sapiens
CN0166.1 LM166 CATGCTGAGATCAA Homo sapiens
CN0167.1 LM167 WYTTGACCTTTTCA Homo sapiens
CN0168.1 LM168 GCTTGTCAGAAACA Homo sapiens
CN0169.1 LM169 TTCCCAGCTGTTGC Homo sapiens
CN0170.1 LM170 WNNCTTGTAAWTMAGAR Homo sapiens
CN0171.1 LM171 RTGTTAATGACTTC Homo sapiens
CN0172.1 LM172 AAATGAAATTCATTTG Homo sapiens
CN0173.1 LM173 ACTGATTTTCCTGACAA Homo sapiens
CN0174.1 LM174 AGCTGCCAAAAATC Homo sapiens
CN0175.1 LM175 CTGTTGACAGTAAA Homo sapiens
CN0176.1 LM176 GAGCCAGCTGGCTCM Homo sapiens
CN0177.1 LM177 CTTTGGCTTCAGACCAAAT Homo sapiens
CN0178.1 LM178 NNMWTTCATTTTCCAAAGCA Homo sapiens
CN0179.1 LM179 MTKNYWRATKMATYWRKMAR Homo sapiens
CN0180.1 LM180 KWTTTCATTTGAATGCT Homo sapiens
CN0181.1 LM181 WTTTGGCTTTAATGA Homo sapiens
CN0182.1 LM182 TCATTTTGCAAGTGCAA Homo sapiens
CN0183.1 LM183 AGCTGTCATTCTTGGAA Homo sapiens
CN0184.1 LM184 CTGCCCTTGATTTG Homo sapiens
CN0185.1 LM185 GCTTTGCTTCATTTCAG Homo sapiens
CN0186.1 LM186 GGCAGTAATTTTCC Homo sapiens
CN0187.1 LM187 CTTTGATCTTTCATT Homo sapiens
CN0188.1 LM188 TCTGACAGAAATGTCAA Homo sapiens
CN0189.1 LM189 TGYTCATTTGAAAGGWAATR Homo sapiens
CN0190.1 LM190 TTAATGGCCCATGAAATGA Homo sapiens
CN0191.1 LM191 ATCCATTTGTTGCCATGGT Homo sapiens
CN0192.1 LM192 WTKWMMTTTKVAAAKKWMAW Homo sapiens
CN0193.1 LM193 GTTCTCTGAAATGAAGT Homo sapiens
CN0194.1 LM194 AGAGGGCAGCARAGYCCCA Homo sapiens
CN0195.1 LM195 TTTCCTTTCCAGCTG Homo sapiens
CN0196.1 LM196 ATTCATTTTGGCTTTGAAAG Homo sapiens
CN0197.1 LM197 AAAGATGCARTATCCCTTTT Homo sapiens
CN0198.1 LM198 MTGAACTTTGTTTGAACT Homo sapiens
CN0199.1 LM199 GCTCTGGAAATTTCCAG Homo sapiens
CN0200.1 LM200 KNNNTTTAATGGGAAATYTGMWWWK Homo sapiens
Showing 100 profiles of page 2 from 3 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.