JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0786.1 POU3F1 Homo sapiens Homeo domain factors POU domain factors
MA0787.1 POU3F2 Homo sapiens Homeo domain factors POU domain factors
MA0788.1 POU3F3 Homo sapiens Homeo domain factors POU domain factors
MA0789.1 POU3F4 Homo sapiens Homeo domain factors POU domain factors
MA0790.1 POU4F1 Homo sapiens Homeo domain factors POU domain factors
MA0791.1 POU4F3 Homo sapiens Homeo domain factors POU domain factors
MA0792.1 POU5F1B Homo sapiens Homeo domain factors POU domain factors
MA0793.1 POU6F2 Homo sapiens Homeo domain factors POU domain factors
MA0794.1 PROX1 Homo sapiens Homeo domain factors HD-PROS factors
MA0795.1 SMAD3 Homo sapiens SMAD/NF-1 DNA-binding domain factors SMAD factors
Showing 10 profiles of page 103 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.