JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0796.1 TGIF1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0797.1 TGIF2 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0798.1 RFX3 Homo sapiens Fork head / winged helix factors RFX-related factors
MA0798.2 RFX3 Homo sapiens Fork head / winged helix factors RFX-related factors
MA0799.1 RFX4 Homo sapiens Fork head / winged helix factors RFX-related factors
MA0800.1 EOMES Homo sapiens T-Box factors TBrain-related factors
MA0801.1 MGA Homo sapiens T-Box factors TBX6-related factors
MA0802.1 TBR1 Homo sapiens T-Box factors TBrain-related factors
MA0803.1 TBX15 Homo sapiens T-Box factors TBX1-related factors
MA0804.1 TBX19 Homo sapiens T-Box factors Brachyury-related factors
Showing 10 profiles of page 104 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.