JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0890.1 GBX2 Homo sapiens Homeo domain factors HOX-related factors
MA0891.1 GSC2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0892.1 GSX1 Homo sapiens Homeo domain factors HOX-related factors
MA0893.1 GSX2 Homo sapiens Homeo domain factors HOX-related factors
MA0893.2 GSX2 Homo sapiens Homeo domain factors HOX-related factors
MA0894.1 HESX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0895.1 HMBOX1 Homo sapiens Homeo domain factors POU domain factors
MA0896.1 Hmx1 Mus musculus Homeo domain factors NK-related factors
MA0897.1 Hmx2 Mus musculus Homeo domain factors NK-related factors
MA0898.1 Hmx3 Mus musculus Homeo domain factors NK-related factors
Showing 10 profiles of page 115 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.