JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0912.2 HOXD3 Homo sapiens Homeo domain factors HOX-related factors
MA0913.1 Hoxd9 Mus musculus Homeo domain factors HOX-related factors
MA0913.2 HOXD9 Homo sapiens Homeo domain factors HOX-related factors
MA0914.1 ISL2 Homo sapiens Homeo domain factors HD-LIM factors
MA0915.1 dve Drosophila melanogaster Homeo domain factors
MA0916.1 Ets21C Drosophila melanogaster Tryptophan cluster factors Ets-related factors
MA0917.1 gcm2 Drosophila melanogaster GCM domain factors GCM factors
MA0918.1 unc-62 Caenorhabditis briggsae Homeo domain factors TALE-type homeo domain factors
MA0919.1 dsc-1 Caenorhabditis briggsae Homeo domain factors
MA0920.1 fkh-2 Caenorhabditis briggsae Fork head / winged helix factors Forkhead box (FOX) factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.