JASPAR CORE

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Total 1964 profiles

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ID Name Species Class Family Sequence logo
MA0969.1 CMTA2 Arabidopsis thaliana CG-1 domain
MA0970.1 CMTA3 Arabidopsis thaliana CG-1 domain
MA0971.1 DREB1A Arabidopsis thaliana AP2/ERF domain
MA0972.1 CCA1 Arabidopsis thaliana Tryptophan cluster factors Myb/SANT domain factors
MA0973.1 CDF2 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA0974.1 CDF3 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA0974.2 CDF3 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA0975.1 CRF2 Arabidopsis thaliana AP2/ERF domain
MA0976.1 CRF4 Arabidopsis thaliana AP2/ERF domain
MA0976.2 CRF4 Arabidopsis thaliana AP2/ERF domain
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.