JASPAR CORE

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Total 1964 profiles

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ID Name Species Class Family Sequence logo
MA0977.1 DOF2.5 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA0978.1 DREB1E Arabidopsis thaliana AP2/ERF domain
MA0979.1 ERF008 Arabidopsis thaliana AP2/ERF domain
MA0980.1 RAP2-10 Arabidopsis thaliana AP2/ERF domain
MA0980.2 RAP2-10 Arabidopsis thaliana AP2/ERF domain
MA0981.1 DOF1.8 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA0982.1 DOF2.4 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA0983.1 DOF5.6 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA0984.1 DOF5.7 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA0985.1 DRE1C Arabidopsis thaliana Beta-Hairpin-Ribbon AP2 MBD_like
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.