JASPAR CORE

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Total 1964 profiles

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ID Name Species Class Family Sequence logo
MA1004.1 ERF13 Arabidopsis thaliana AP2/ERF domain
MA1005.1 ERF3 Arabidopsis thaliana AP2/ERF domain
MA1005.2 ERF3 Arabidopsis thaliana AP2/ERF domain
MA1006.1 ERF6 Arabidopsis thaliana AP2/ERF domain
MA1007.1 PHYPADRAFT_173530 Physcomitrella patens AP2/ERF domain
MA1008.1 PHYPADRAFT_182268 Physcomitrella patens AP2/ERF domain
MA1009.1 ARF3 Arabidopsis thaliana B3 domain
MA1010.1 PHYPADRAFT_64121 Physcomitrella patens AP2/ERF domain
MA1011.1 PHYPADRAFT_72483 Physcomitrella patens Basic helix-loop-helix factors (bHLH)
MA1012.1 AGL27 Arabidopsis thaliana MADS box factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.