JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1033.1 OJ1058_F05.8 Oryza sativa Japonica Group Basic leucine zipper factors (bZIP)
MA1034.1 Os05g0497200 Oryza sativa Japonica Group AP2/ERF domain
MA1035.1 TCP4 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1036.1 MYB111 Arabidopsis thaliana Tryptophan cluster factors Myb/SANT domain factors
MA1037.1 MYB24 Arabidopsis thaliana Tryptophan cluster factors Myb/SANT domain factors
MA1038.1 MYB3 Arabidopsis thaliana Tryptophan cluster factors Myb/SANT domain factors
MA1039.1 MYB4 Arabidopsis thaliana Tryptophan cluster factors Myb/SANT domain factors
MA1040.1 MYB46 Arabidopsis thaliana Tryptophan cluster factors Myb/SANT domain factors
MA1041.1 MYB55 Arabidopsis thaliana Tryptophan cluster factors Myb/SANT domain factors
MA1042.1 MYB59 Arabidopsis thaliana Tryptophan cluster factors Myb/SANT domain factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.