JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1052.1 RAP2-6 Arabidopsis thaliana AP2/ERF domain
MA1053.1 ERF109 Arabidopsis thaliana AP2/ERF domain
MA1054.1 ARALYDRAFT_897773 Arabidopsis lyrata subsp. lyrata Basic helix-loop-helix factors (bHLH) TCP domain
MA1055.1 SPL1 Arabidopsis thaliana SBP-type zinc finger
MA1056.1 SPL11 Arabidopsis thaliana SBP-type zinc finger
MA1057.1 SPL12 Arabidopsis thaliana SBP-type zinc finger
MA1058.1 SPL4 Arabidopsis thaliana SBP-type zinc finger
MA1059.1 SPL5 Arabidopsis thaliana SBP-type zinc finger
MA1059.2 SPL5 Arabidopsis thaliana SBP-type zinc finger
MA1060.1 SPL7 Arabidopsis thaliana SBP-type zinc finger
Showing 10 profiles of page 133 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.