JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1157.1 NUC Arabidopsis thaliana C2H2 zinc finger factors
MA1158.1 MGP Arabidopsis thaliana C2H2 zinc finger factors
MA1159.1 SGR5 Arabidopsis thaliana C2H2 zinc finger factors
MA1160.1 AT1G14580 Arabidopsis thaliana C2H2 zinc finger factors
MA1161.1 TSO1 Arabidopsis thaliana Other CPP
MA1162.1 TCX2 Arabidopsis thaliana Other CPP
MA1163.1 PHL11 Arabidopsis thaliana Other G2-like
MA1164.1 HHO5 Arabidopsis thaliana Other G2-like
MA1165.1 HHO6 Arabidopsis thaliana Other G2-like
MA1166.1 PHL12 Arabidopsis thaliana Other G2-like
Showing 10 profiles of page 145 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.