JASPAR CORE

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Total 1964 profiles

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ID Name Species Class Family Sequence logo
MA1235.1 AIL7 Arabidopsis thaliana AP2/ERF domain
MA1236.1 ESE3 Arabidopsis thaliana AP2/ERF domain
MA1237.1 AT4G16750 Arabidopsis thaliana AP2/ERF domain
MA1238.1 ERF38 Arabidopsis thaliana AP2/ERF domain
MA1238.2 ERF38 Arabidopsis thaliana AP2/ERF domain
MA1239.1 ERF104 Arabidopsis thaliana AP2/ERF domain
MA1240.1 ERF10 Arabidopsis thaliana AP2/ERF domain
MA1241.1 AT4G32800 Arabidopsis thaliana AP2/ERF domain
MA1242.1 AT3G57600 Arabidopsis thaliana AP2/ERF domain
MA1243.1 DREB19 Arabidopsis thaliana AP2/ERF domain
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.