JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1253.1 AT3G16280 Arabidopsis thaliana AP2/ERF domain
MA1255.1 AT1G22810 Arabidopsis thaliana AP2/ERF domain
MA1256.1 RAP212 Arabidopsis thaliana AP2/ERF domain
MA1257.1 ERF9 Arabidopsis thaliana AP2/ERF domain
MA1258.1 DREB2 Arabidopsis thaliana AP2/ERF domain
MA1259.1 AT1G01250 Arabidopsis thaliana AP2/ERF domain
MA1260.1 AT1G77640 Arabidopsis thaliana AP2/ERF domain
MA1261.1 AT5G67000 Arabidopsis thaliana AP2/ERF domain
MA1262.1 ERF2 Arabidopsis thaliana AP2/ERF domain
MA1263.1 AT1G36060 Arabidopsis thaliana AP2/ERF domain
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.