JASPAR CORE

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Total 1964 profiles

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ID Name Species Class Family Sequence logo
MA1264.1 ESE1 Arabidopsis thaliana AP2/ERF domain
MA1265.1 ERF015 Arabidopsis thaliana AP2/ERF domain
MA1265.2 ERF015 Arabidopsis thaliana AP2/ERF domain
MA1266.1 RAP211 Arabidopsis thaliana AP2/ERF domain
MA1267.1 AT5G66940 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1268.1 AT1G69570 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1269.1 dof4.5 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1270.1 AT3G45610 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1271.1 DAG2 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1272.1 AT2G28810 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.