JASPAR CORE

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Total 1964 profiles

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ID Name Species Class Family Sequence logo
MA1273.1 dof4.2 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1274.1 OBP3 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1275.1 AT1G47655 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1276.1 AT3G52440 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1277.1 Adof1 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1278.1 OBP1 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1279.1 COG1 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1280.1 OBP4 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1281.1 AT5G02460 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1282.1 PTF1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.