JASPAR CORE

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Total 1964 profiles

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ID Name Species Class Family Sequence logo
MA1323.1 GATA19 Arabidopsis thaliana Other C4 zinc finger-type factors GATA-type zinc fingers
MA1324.1 GATA20 Arabidopsis thaliana Other C4 zinc finger-type factors GATA-type zinc fingers
MA1325.1 GATA14 Arabidopsis thaliana Other C4 zinc finger-type factors GATA-type zinc fingers
MA1326.1 ZHD5 Arabidopsis thaliana Homeo domain factors ZF-HD
MA1327.1 ATHB23 Arabidopsis thaliana Homeo domain factors ZF-HD
MA1327.2 ATHB23 Arabidopsis thaliana Homeo domain factors ZF-HD
MA1328.1 ATHB34 Arabidopsis thaliana Homeo domain factors ZF-HD
MA1329.1 ZHD1 Arabidopsis thaliana Homeo domain factors ZF-HD
MA1329.2 ZHD1 Arabidopsis thaliana Homeo domain factors ZF-HD
MA1330.1 ZHD6 Arabidopsis thaliana Homeo domain factors ZF-HD
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.