JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1352.1 TRP1 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1353.1 AT1G72740 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1354.1 AT4G12670 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1355.1 TBP3 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1356.1 TRP2 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1357.1 bHLH80 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1358.1 bHLH130 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1359.1 bHLH31 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1360.1 bHLH74 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1361.1 bHLH18 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
Showing 10 profiles of page 165 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.