JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1650.1 ZBTB14 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA1651.1 ZFP42 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA1652.1 ZKSCAN5 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1653.1 ZNF148 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA1654.1 ZNF16 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA1655.1 ZNF341 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1656.1 ZNF449 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA1657.1 ZNF652 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA1659.1 ABF4 Arabidopsis thaliana Basic leucine zipper factors (bZIP)
MA1660.1 ANAC13 Arabidopsis thaliana NAC/NAM
Showing 10 profiles of page 192 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.