JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1661.1 AT-GTL1 Arabidopsis thaliana Helix-Turn-Helix Trihelix
MA1662.1 AT3G10030 Arabidopsis thaliana MADS box factors
MA1663.1 ANAC050 Arabidopsis thaliana NAC/NAM
MA1664.1 HSFA6B Arabidopsis thaliana Heat shock factors HSF factors
MA1665.1 HSFB2A Arabidopsis thaliana Heat shock factors HSF factors
MA1666.1 HSFB2B Arabidopsis thaliana Heat shock factors HSF factors
MA1667.1 HSFC1 Arabidopsis thaliana Heat shock factors HSF factors
MA1668.1 DPBF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP)
MA1669.1 DREB1B Arabidopsis thaliana AP2/ERF domain
MA1670.1 DREB1C Arabidopsis thaliana AP2/ERF domain
Showing 10 profiles of page 193 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.