JASPAR CORE

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Total 1964 profiles

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ID Name Species Class Family Sequence logo
MA1681.1 SRM1 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1682.1 TCX3 Arabidopsis thaliana CXC
MA1683.1 FOXA3 Homo sapiens Fork head / winged helix factors Forkhead box (FOX) factors
MA1684.1 Foxn1 Mus musculus Fork head / winged helix factors Forkhead box (FOX) factors
MA1685.1 ARF10 Zea mays B3 domain
MA1686.1 ARF13 Zea mays B3 domain
MA1687.1 ARF14 Zea mays B3 domain
MA1688.1 ARF16 Zea mays B3 domain
MA1689.1 ARF18 Zea mays B3 domain
MA1690.1 ARF25 Zea mays B3 domain
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Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Cluster

Cluster selected models using STAMP tool.



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Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

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Download the PFMs of the model(s) selected in four different formats.