JASPAR CORE

  1. Home
  2. Collection core

Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0014.3 PAX5 Homo sapiens Paired box factors Paired domain only
MA0015.1 Cf2 Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0016.1 usp Drosophila melanogaster Nuclear receptors with C4 zinc fingers
MA0017.1 NR2F1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0017.2 NR2F1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0018.1 CREB1 Homo sapiens Basic leucine zipper factors (bZIP) CREB-related factors
MA0018.2 CREB1 Homo sapiens Mus musculus Rattus norvegicus Basic leucine zipper factors (bZIP) CREB-related factors
MA0018.3 CREB1 Homo sapiens Basic leucine zipper factors (bZIP) CREB-related factors
MA0018.4 CREB1 Homo sapiens Basic leucine zipper factors (bZIP) CREB-related factors
MA0019.1 Ddit3::Cebpa Rattus norvegicus Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) C/EBP-related factors::C/EBP-related factors
MA0020.1 Dof2 Zea mays C2H2 zinc finger factors Dof-type
MA0021.1 Dof3 Zea mays C2H2 zinc finger factors Dof-type
MA0022.1 dl Drosophila melanogaster Rel homology region (RHR) factors
MA0023.1 dl(var.2) Drosophila melanogaster Rel homology region (RHR) factors
MA0024.1 E2F1 Homo sapiens Fork head / winged helix factors E2F-related factors
MA0024.2 E2F1 Homo sapiens Fork head / winged helix factors E2F-related factors
MA0024.3 E2F1 Homo sapiens Fork head / winged helix factors E2F-related factors
MA0025.1 NFIL3 Homo sapiens Basic leucine zipper factors (bZIP) C/EBP-related factors
MA0025.2 NFIL3 Homo sapiens Basic leucine zipper factors (bZIP) C/EBP-related
MA0026.1 Eip74EF Drosophila melanogaster Tryptophan cluster factors Ets-related factors
MA0027.1 En1 Mus musculus Homeo domain factors NK-related factors
MA0027.2 EN1 Homo sapiens Homeo domain factors NK-related factors
MA0028.1 ELK1 Homo sapiens Tryptophan cluster factors Ets-related factors
MA0028.2 ELK1 Homo sapiens Tryptophan cluster factors Ets-related factors
MA0029.1 Mecom Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
Showing 25 profiles of page 2 from 79 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.