JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0132.1 Pdx1 Mus musculus Homeo domain factors HOX-related factors
MA0132.2 PDX1 Homo sapiens Homeo domain factors HOX-related factors
MA0135.1 Lhx3 Mus musculus Homeo domain factors HD-LIM factors
MA0136.1 ELF5 Mus musculus Tryptophan cluster factors Ets-related factors
MA0136.2 ELF5 Homo sapiens Tryptophan cluster factors Ets-related factors
MA0137.1 STAT1 Homo sapiens STAT domain factors STAT factors
MA0137.2 STAT1 Homo sapiens STAT domain factors STAT factors
MA0137.3 STAT1 Homo sapiens STAT domain factors STAT factors
MA0138.1 REST Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0138.2 REST Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.