JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0182.1 CG4328-RA Drosophila melanogaster Homeo domain factors
MA0183.1 HHEX Drosophila melanogaster Homeo domain factors
MA0184.1 CG9876 Drosophila melanogaster Homeo domain factors
MA0185.1 Deaf1 Drosophila melanogaster SAND domain factors DEAF
MA0186.1 Dfd Drosophila melanogaster Homeo domain factors HOX-related factors
MA0187.1 Dll Drosophila melanogaster Homeo domain factors
MA0188.1 Dr Drosophila melanogaster Homeo domain factors NK-related factors
MA0189.1 E5 Drosophila melanogaster Homeo domain factors
MA0190.1 Gsc Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0191.1 HGTX Drosophila melanogaster Homeo domain factors NK-related factors
Showing 10 profiles of page 33 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.