JASPAR CORE

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Total 1964 profiles

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ID Name Species Class Family Sequence logo
MA0219.1 ems Drosophila melanogaster Homeo domain factors NK-related factors
MA0220.1 en Drosophila melanogaster Homeo domain factors NK-related factors
MA0221.1 eve Drosophila melanogaster Homeo domain factors HOX-related factors
MA0222.1 exd Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0224.1 exex Drosophila melanogaster Homeo domain factors
MA0225.1 ftz Drosophila melanogaster Homeo domain factors HOX-related factors
MA0226.1 hbn Drosophila melanogaster Homeo domain factors
MA0227.1 hth Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0228.1 ind Drosophila melanogaster Homeo domain factors
MA0229.1 inv Drosophila melanogaster Homeo domain factors NK-related factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.