JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0239.1 prd Drosophila melanogaster Paired box factors
MA0240.1 repo Drosophila melanogaster Homeo domain factors
MA0241.1 ro Drosophila melanogaster Homeo domain factors
MA0242.1 Bgb::run Drosophila melanogaster Runt domain factors::Runt domain factors Runt-related factors::Runt-related factors
MA0243.1 sd Drosophila melanogaster TEA domain factors
MA0244.1 slbo Drosophila melanogaster Basic leucine zipper factors (bZIP) C/EBP-related factors
MA0245.1 slou Drosophila melanogaster Homeo domain factors NK-related factors
MA0246.1 so Drosophila melanogaster Homeo domain factors HD-SINE factors
MA0247.1 tin Drosophila melanogaster Homeo domain factors Homeo
MA0247.2 tin Drosophila melanogaster Homeo domain factors
Showing 10 profiles of page 39 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.