JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0296.1 FKH1 Saccharomyces cerevisiae Fork head / winged helix factors Forkhead box (FOX) factors
MA0297.1 FKH2 Saccharomyces cerevisiae Fork head / winged helix factors Forkhead box (FOX) factors
MA0298.1 FZF1 Saccharomyces cerevisiae C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0299.1 GAL4 Saccharomyces cerevisiae C6 zinc cluster factors
MA0300.1 GAT1 Saccharomyces cerevisiae Other C4 zinc finger-type factors GATA-type zinc fingers
MA0301.1 GAT3 Saccharomyces cerevisiae Other C4 zinc finger-type factors GATA-type zinc fingers
MA0302.1 GAT4 Saccharomyces cerevisiae Other C4 zinc finger-type factors GATA-type zinc fingers
MA0303.1 GCN4 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0304.1 GCR1 Saccharomyces cerevisiae
MA0305.1 GCR2 Saccharomyces cerevisiae
Showing 10 profiles of page 45 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.