JASPAR CORE

  1. Home
  2. Collection core

Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1264.1 ESE1 Arabidopsis thaliana AP2/ERF domain
MA1265.1 ERF015 Arabidopsis thaliana AP2/ERF domain
MA1265.2 ERF015 Arabidopsis thaliana AP2/ERF domain
MA1266.1 RAP211 Arabidopsis thaliana AP2/ERF domain
MA1267.1 AT5G66940 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1268.1 AT1G69570 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1269.1 dof4.5 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1270.1 AT3G45610 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1271.1 DAG2 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1272.1 AT2G28810 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1273.1 dof4.2 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1274.1 OBP3 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1275.1 AT1G47655 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1276.1 AT3G52440 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1277.1 Adof1 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1278.1 OBP1 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1279.1 COG1 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1280.1 OBP4 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1281.1 AT5G02460 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
MA1282.1 PTF1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1283.1 TCP14 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1284.1 TCP1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1285.1 At2g45680 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1286.1 TCP24 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1287.1 TCP21 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
Showing 25 profiles of page 63 from 79 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.