JASPAR CORE

  1. Home
  2. Collection core

Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1288.1 At1g72010 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1289.1 TCP3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1290.1 TCP17 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1291.1 TCP7 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1292.1 MYB27 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1293.1 MYB57 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1294.1 MYB62 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1295.1 WRKY20 Arabidopsis thaliana WRKY
MA1296.1 WRKY46 Arabidopsis thaliana WRKY
MA1297.1 WRKY26 Arabidopsis thaliana WRKY
MA1298.1 WRKY29 Arabidopsis thaliana WRKY
MA1299.1 WRKY17 Arabidopsis thaliana WRKY
MA1300.1 WRKY6 Arabidopsis thaliana WRKY
MA1301.1 WRKY33 Arabidopsis thaliana WRKY
MA1302.1 WRKY65 Arabidopsis thaliana WRKY
MA1303.1 WRKY22 Arabidopsis thaliana WRKY
MA1304.1 WRKY59 Arabidopsis thaliana WRKY
MA1305.1 WRKY55 Arabidopsis thaliana WRKY
MA1306.1 WRKY11 Arabidopsis thaliana WRKY
MA1307.1 WRKY31 Arabidopsis thaliana WRKY
MA1308.1 WRKY70 Arabidopsis thaliana WRKY
MA1309.1 WRKY3 Arabidopsis thaliana WRKY
MA1310.1 WRKY42 Arabidopsis thaliana WRKY
MA1311.1 WRKY28 Arabidopsis thaliana WRKY
MA1311.2 WRKY28 Arabidopsis thaliana WRKY
Showing 25 profiles of page 64 from 79 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.