JASPAR CORE

  1. Home
  2. Collection core

Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1385.1 AT2G40260 Arabidopsis thaliana Other G2-like
MA1386.1 HHO3 Arabidopsis thaliana Other G2-like
MA1387.1 AT1G13300 Arabidopsis thaliana Other G2-like
MA1388.1 AT3G24120 Arabidopsis thaliana Other G2-like
MA1389.1 PHL1 Arabidopsis thaliana Other G2-like
MA1390.1 HHO2 Arabidopsis thaliana Other G2-like
MA1391.1 MYB33 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1391.2 MYB33 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1392.1 MYB98 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1393.1 MYB70 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1393.2 MYB70 Arabidopsis thaliana Tryptophan cluster factors Myb/SANT domain factors
MA1394.1 MYB73 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1394.2 MYB73 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1395.1 MYB77 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1396.1 GATA6 Arabidopsis thaliana Other C4 zinc finger-type factors GATA-type zinc fingers
MA1397.1 At1g74840 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1398.1 KUA1 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1398.2 KUA1 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1399.1 At5g08520 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1400.1 At1g19000 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1401.1 EPR1 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1402.1 BPC6 Arabidopsis thaliana Other BBR-BPC
MA1403.1 BPC5 Arabidopsis thaliana Other BBR-BPC
MA1404.1 BPC1 Arabidopsis thaliana Other BBR-BPC
MA1405.1 SIZF2 Solanum lycopersicum C2H2 zinc finger factors
Showing 25 profiles of page 68 from 79 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.