JASPAR CORE

  1. Home
  2. Collection core

Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0550.2 BZR1 Arabidopsis thaliana Other BES1
MA0551.1 HY5 Arabidopsis thaliana Basic leucine zipper factors (bZIP)
MA0552.1 PIF1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0553.1 SMZ Arabidopsis thaliana AP2/ERF domain
MA0554.1 SOC1 Arabidopsis thaliana MADS box factors
MA0555.1 SVP Arabidopsis thaliana MADS box factors
MA0556.1 AP3 Arabidopsis thaliana MADS box factors
MA0557.1 FHY3 Arabidopsis thaliana SWIM-type zinc finger
MA0558.1 FLC Arabidopsis thaliana MADS box factors
MA0559.1 PI Arabidopsis thaliana MADS box factors
Showing 10 profiles of page 75 from 197 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.