JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0679.2 ONECUT1 Homo sapiens Homeo domain factors HD-CUT factors
MA0680.1 PAX7 Homo sapiens Paired box factors Paired plus homeo domain
MA0681.1 Phox2b Mus musculus Homeo domain factors Paired-related HD factors
MA0681.2 PHOX2B Homo sapiens Homeo domain factors Paired-related HD factors
MA0682.1 Pitx1 Mus musculus Homeo domain factors Paired-related HD factors
MA0682.2 PITX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0683.1 POU4F2 Homo sapiens Homeo domain factors POU domain factors
MA0684.1 RUNX3 Homo sapiens Runt domain factors Runt-related factors
MA0684.2 RUNX3 Homo sapiens Runt domain factors Runt-related factors
MA0685.1 SP4 Homo sapiens C2H2 zinc finger factors Three-zinc finger Krüppel-related factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.