JASPAR CORE

  1. Home
  2. Collection core

Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0720.1 Shox2 Mus musculus Homeo domain factors Paired-related HD factors
MA0721.1 UNCX Homo sapiens Homeo domain factors Paired-related HD factors
MA0722.1 VAX1 Homo sapiens Homeo domain factors NK-related factors
MA0723.1 VAX2 Homo sapiens Homeo domain factors NK-related factors
MA0724.1 VENTX Homo sapiens Homeo domain factors NK-related factors
MA0725.1 VSX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0726.1 VSX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0727.1 NR3C2 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0728.1 Nr2f6(var.2) Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0729.1 RARA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
Showing 10 profiles of page 95 from 197 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.