JASPAR Collection PBM_HOMEO

Total 176 profiles

Display profiles
ID Name Species Class Family Sequence logo
PH0151.1 Pou6f1_1 Mus musculus Helix-Turn-Helix Homeo
PH0152.1 Pou6f1_2 Mus musculus Helix-Turn-Helix Homeo
PH0153.1 Prop1 Mus musculus Helix-Turn-Helix Homeo
PH0154.1 Prrx1 Mus musculus Helix-Turn-Helix Homeo
PH0155.1 Prrx2 Mus musculus Helix-Turn-Helix Homeo
PH0156.1 Rax Mus musculus Helix-Turn-Helix Homeo
PH0157.1 Rhox11_1 Mus musculus Helix-Turn-Helix Homeo
PH0158.1 Rhox11_2 Mus musculus Helix-Turn-Helix Homeo
PH0159.1 Rhox6 Mus musculus Helix-Turn-Helix Homeo
PH0160.1 Shox2 Mus musculus Helix-Turn-Helix Homeo
PH0161.1 Six1 Mus musculus Helix-Turn-Helix Homeo
PH0162.1 Six2 Mus musculus Helix-Turn-Helix Homeo
PH0163.1 Six3 Mus musculus Helix-Turn-Helix Homeo
PH0164.1 Six4 Mus musculus Helix-Turn-Helix Homeo
PH0165.1 Six6_1 Mus musculus Helix-Turn-Helix Homeo
PH0166.1 Six6_2 Mus musculus Helix-Turn-Helix Homeo
PH0167.1 Tcf1 Mus musculus Helix-Turn-Helix Homeo
PH0168.1 Hnf1b Mus musculus Helix-Turn-Helix Homeo
PH0169.1 Tgif1 Mus musculus Helix-Turn-Helix Homeo
PH0170.1 Tgif2 Mus musculus Helix-Turn-Helix Homeo
PH0171.1 Nkx2-1 Mus musculus Helix-Turn-Helix Homeo
PH0172.1 Tlx2 Mus musculus Helix-Turn-Helix Homeo
PH0173.1 Uncx Mus musculus Helix-Turn-Helix Homeo
PH0174.1 Vax1 Mus musculus Helix-Turn-Helix Homeo
PH0175.1 Vax2 Mus musculus Helix-Turn-Helix Homeo
Showing 25 profiles of page 7 from 8 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.