JASPAR Collection UNVALIDATED

  1. Home
  2. Collection unvalidated

Total 337 profiles

These profiles are regarded as unvalidated because our curators failed to find any orthogonal support from existing literature. We encourage the community to perform experiments and/or point us to literature that our curators missed in order to support these profiles.
Display profiles
ID Name Species Class Family Sequence logo
UN0099.1 CNI01970 Filobasidiella neoformans C2H2 zinc finger factors
UN0100.1 PGTG_04827 Puccinia graminis C2H2 zinc finger factors
UN0101.1 SCHCODRAFT_110010 Schizophyllum commune C6 zinc cluster factors
UN0102.1 SCHCODRAFT_67234 Schizophyllum commune C6 zinc cluster factors
UN0103.1 FG04288.1 Gibberella zeae C2H2 zinc finger factors
UN0104.1 Smp_097750 Schistosoma mansoni Cold-shock domain factors
UN0105.1 ceh-74 Caenorhabditis elegans Homeo domain factors
UN0106.1 lin-28 Caenorhabditis elegans Cold-shock domain factors
UN0107.1 Cp190 Drosophila melanogaster C2H2 zinc finger factors
UN0108.1 Dsp1 Drosophila melanogaster High-mobility group (HMG) domain factors
Showing 10 profiles of page 9 from 34 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.