Detailed information of matrix profile MA0002.2

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Profile summary
Name: RUNX1
Matrix ID: MA0002.2
Class: Runt domain factors
Family: Runt-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation:
Uniprot ID: Q01196  
Source:
Comment: Data is from Frank Grosveld's Lab.

Sequence logo

Frequency matrix

         
A [ 1053 1325 1339 93 13 1716 53 1936 656 814 521 ]
C [ 289 81 251 1848 1987 70 1872 7 149 467 696 ]
G [ 158 463 400 42 0 127 75 0 1072 485 496 ]
T [ 500 131 10 17 0 87 0 57 123 234 287 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0002.1 MA0002 1 RUNX1 Homo sapiens
Runt-related factors Runt domain factors
MA0002.2 MA0002 2 RUNX1 Mus musculus
Runt-related factors Runt domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0091.1

ChIP-seq Centrality
log(P-value): -1042.13

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0091.1

ChIP-seq Centrality
log(P-value): -1004.13

TFFM detailed summary logos

Description: runt-related transcription factor 1

Alias: PEBP2A2,AMLCR1

Symbol: RUNX1

Consensus:

Included Models:

GC Content: