Detailed information of matrix profile MA0122.2

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Profile summary
Name: NKX3-2
Matrix ID: MA0122.2
Class: Homeo domain factors
Family: NK-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585360
Uniprot ID: P78367  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 2202 1715 21 5712 170 5 26 5712 5712 ]
C [ 1032 5712 5712 105 5712 36 197 357 1339 ]
G [ 1611 2832 18 49 26 25 0 173 2456 ]
T [ 867 615 488 272 27 5712 5712 761 1876 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0122.1 MA0122 1 Nkx3-2 Mus musculus
NK-related factors Homeo domain factors
MA0122.2 MA0122 2 NKX3-2 Homo sapiens
NK-related factors Homeo domain factors
MA0122.3 MA0122 3 Nkx3-2 Mus musculus
NK-related factors Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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